Challenges and Progress in Evaluating Apple Root Resistance Responses to Pythium ultimum Infection

Due to the hidden nature of roots in the soils, it is more challenging to investigate their resistance traits and defense responses as compared to those of the aerial organs. At the same time, it is self-evident that root health is fundamental to a plant’s entire life and productivity. It is also easily conceivable that root function, physiology, morphology, and architecture are constantly impacted by the complex soil environment including both biotic and abiotic factors. This report summarizes and updates the challenges and progress in evaluating resistance responses of apple root to infection from a necrotrophic oomycete pathogen, Pythium ultimum. Several obstacles impede the progress of investigating apple root resistance traits including the difficulties of direct and real-time evaluation and the lack of a continuous supply of apple plants for repeated infection assays. Systematic and detailed analyses were made possible by implementing a micropropagation procedure for continuously generating uniform apple plants for repeated infection assays. As a result, an elite panel of apple rootstock germplasm with distinct resistance levels was identified. These apple rootstock genotypes with well-defined resistance levels are the much-needed plant materials for subsequent genomics and transgenics analyses to define the functional roles of specific candidate genes. Careful microscopic examination revealed contrasting necrosis progression patterns between resistant and susceptible genotypes, which shed light on the potential mechanisms underlying resistance traits. Our continuing research will provide a clearer view regarding the genetic elements regulating resistance traits in apple roots to P. ultimum infection.